Sashimi viewer visualized transcriptome RNA-seq coverage data alongside splice junction-spanning sequence reads, using compressed intron genomic coordinates.

Relevant R version info:

  • R version 3.6.0 (2019-04-26)
  • jampack: 0.0.21.900
  • splicejam: 0.0.57.900
  • jamba: 0.0.45.900
  • colorjam: 0.0.12.900
  • farrisdata: 0.0.10.900
  • ggplot2: 3.2.1
  • plotly: 4.9.0

Plot Parameters



Sashimi Plot

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  • Plot Style:
           

           
    Axis Settings:
    Exon Models:
       
           

Sample Selection and Order

Select samples by dragging them down to the Display Samples section.